Scaffold Ga0164296_1019638

Overview

Basic Information

• Taxon OID: 3300013093
• Scaffold ID: Ga0164296_1019638
• Source Dataset Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4295
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008686	Metagenome / Metatranscriptome	329	Y
F018308	Metagenome	235	Y
F032129	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_10196381	F008686	GAGG	VTYTELVTAIQSYTENQFPTVYLADGTTESTTSQINRFIEQAEQRIYNTIQFPSLRANV
Ga0164296_101963812	F018308	N/A	MQEAPNHGKVTSMATQRREESEWRSKRQRSCFSKEGGDEFKASPTRGRLKEKILLRKNVRDEGQVDVRKDGKRPEFKD*
Ga0164296_101963813	F032129	N/A	TVPAGYSFYLDLAEANTSNSYTGSTIVTYSVQATNNVTGVTINVLQQPFVSIYTVNRASEPFVYTEKTDVQWQLKASTGTIAAGIVIAGKLIKNSADAGST*