Scaffold Ga0163199_1037898

Overview

Basic Information

• Taxon OID: 3300013092
• Scaffold ID: Ga0163199_1037898
• Source Dataset Name: Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2263
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0621
  • Long. (^o): -124.7214
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034814	Metagenome	173	Y
F081864	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163199_10378985	F034814	AGGAG	MTSLAAEKTETLPGLHSCFTCADNLGCNLAPRCESMTGCIKWRCQICRAPWWAVGYDHERCNATGVPNGVTYHDGTHMAPLPEASGHYYRHGGYCRVHQSWRCGLERPDADQ*
Ga0163199_10378987	F081864	N/A	FVGLYSRSKAEAFKIAQARDVDRVVVLPDKKLAPQSSSSERPEKLTAEQINRIKERLMAQAEVRKFDGSRGYKRTRTVIPTDGLKAAHIMVVFDVQSKRTAHLIAKRGYYVVDYQKPAMCPGWIDMDSAYRIAKWWFYKKLGGLVPWWAEAEDMIQEGVTRLIERGGDPRMAEDSYRFYVVRSAMAEYLRRNKKHQHQHEDEEKIEAPGSRWGTWDRSYRATETMCRVIEARGIVPMARAA*