Basic Information | |
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Taxon OID | 3300013087 Open in IMG/M |
Scaffold ID | Ga0163212_1023333 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2218 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Malawi: Central Region | |||||||
Coordinates | Lat. (o) | -13.5167 | Long. (o) | 34.7703 | Alt. (m) | Depth (m) | 45 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000473 | Metagenome / Metatranscriptome | 1097 | Y |
F000671 | Metagenome / Metatranscriptome | 945 | Y |
F002060 | Metagenome / Metatranscriptome | 597 | Y |
F011938 | Metagenome / Metatranscriptome | 285 | Y |
F013878 | Metagenome / Metatranscriptome | 267 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0163212_10233332 | F002060 | N/A | MHLDYTAAVIAVLAAILSGMGTAIVAGIRDNKKEKIRKSEREQDHLKIEVKDLKIELYKIERELTEWKDKYYNTIQELIAVKAELEDTMIKLSYIDHKIHEDLEHLDTEF* |
Ga0163212_10233333 | F000671 | GAGG | MEKILCYSCNKTKNKLDVKKSSLLPINLFICETCSSSKFEPRWVIILAGRSQGPDYVKEHIIKRRYVGNEISASELLV* |
Ga0163212_10233334 | F011938 | GGAGG | VREYYDTVHVVFIHEESCHGTVEQLGAWASIVKYSKDGMEYNELMDNEDFSIIDEISFKHIEESE* |
Ga0163212_10233335 | F000473 | AGAAG | MFINKKDIKEHFKYGINHWTGEPNKPVFYTEEMKKAVHQVKKPSGLLMDIVMYPEFLALRLYEDNFLQFEGTKKEMVIDYVGKVKRLLESYGVRCELEGKPSERVL* |
Ga0163212_10233337 | F013878 | AGG | MLNLTELGVEVFIKKARFVTPFWDNYDLIIWKKNNNGFTSVSGMFKKDAWGTAERISVDSDGIWKLPVKHVRNFK* |
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