Scaffold Ga0157618_1045435

Overview

Basic Information

• Taxon OID: 3300013074
• Scaffold ID: Ga0157618_1045435
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES147 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1072
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F079651	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157618_10454351	F079651	N/A	VRNVFSKENLTVAGGGVAATVLTNFILSRTKADGTSLLPMPATNVAAAKIAYAIGIPVVGAVLTRRFNPSLARGMVFGGLINGIVEAIKGYAPAETKRALGFAEYLDYTPMSALNGTPGYSAINQFSNVRPMNSAFANSSAFPADAWGR*
Ga0157618_10454352	F014726	N/A	MGFQSESIISAASQKFGVIDYTRWQAIRWQWYSYVTYPSAGTTELNFFGQVAGQAGVTLQDTNLPKAGSFCQTHFQLKSISTDIQIAVNDVDGFTRANQATLDTRALASDYIGGFVQAGVLNFSVGARPFATIVKPFQYAPPPGSPLDLESTYVNQISAAPVPAAGAAQVVGVPWVTQTKMRSNVYFTDPNILIEAEQ