Scaffold Ga0170681_1054547

Overview

Basic Information

• Taxon OID: 3300013026
• Scaffold ID: Ga0170681_1054547
• Source Dataset Name: Gypsum rock hypoendolithic microbial communities from the Atacama Desert, Chile - Cordon de Lila
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Johns Hopkins Bayview Research CORES
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 806
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium mtb01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock → Gypsum Rock Endolithic And Hypoendolithic Microbial Communities

Source Dataset Sampling Location

• Location Name: Site Cordon de Lila - Atacama Desert, Chile
• Coordinates
  • Lat. (^o): -23.53976
  • Long. (^o): -68.68737

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011177	Metagenome / Metatranscriptome	294	Y
F033108	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170681_10545471	F033108	N/A	VNSGGSDDDPIPAGLILDLEEAFRVLEALEDARLALREAGTALGLQDELATVIRLLHGRLGFDEGGAV*
Ga0170681_10545472	F011177	AGGAGG	VSEPEVLLPAEAARRLGVPTRVIVEAMYEKKLPRVQLEDGTLGIPSDALDSFQIQAG*