Scaffold Ga0169969_1019647

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0169969_1019647

Scaffold Ga0169969_1019647

Overview

Basic Information
Taxon OID	3300013013 Open in IMG/M
Scaffold ID	Ga0169969_1019647 Open in IMG/M
Source Dataset Name	Gypsum rock endolithic microbial communities from the Atacama Desert, Chile - Monturaqui
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Johns Hopkins Bayview Research CORES
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1770
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock → Gypsum Rock Endolithic And Hypoendolithic Microbial Communities

Source Dataset Sampling Location
Location Name	Chile: Atacama Desert
Coordinates	Lat. (^o)	-23.57431	Long. (^o)	-68.10215	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082231	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169969_10196471	F082231	AGGAGG	LPEAATKPGPCQVRSKTESPCPHLAVVEVRGIPFCEACAREQEAYFAIGELTQEVRRLRGEPLAGALGRTRRGRTGGIAADRRLALPGVDGPERLTITKS*

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