Scaffold Ga0169967_1000370

Overview

Basic Information

• Taxon OID: 3300013011
• Scaffold ID: Ga0169967_1000370
• Source Dataset Name: Gypsum crust endolithic microbial communities from the Atacama Desert, Chile - KM37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Johns Hopkins Bayview Research CORES
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23701
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock → Gypsum Rock Endolithic And Hypoendolithic Microbial Communities

Source Dataset Sampling Location

• Location Name: Chile: Atacama Desert
• Coordinates
  • Lat. (^o): -20.43644
  • Long. (^o): -69.58397

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003047	Metagenome	510	Y
F093266	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169967_100037013	F003047	GAGG	LQAATEALASADRELAEHVRRIRLDNAEAILEAKNERTASLYLDGLLDTDEHRRLDAGRARAELDQGHARREVERLHLIVRLLGTQATESK*
Ga0169967_100037018	F093266	GAGG	MDNLAVAVMQADNLAADAPEYEALAEILAYALDLADLGLSSEPDAFDPSELTGPQ*