Scaffold Ga0129327_10004685

Overview

Basic Information

• Taxon OID: 3300013010
• Scaffold ID: Ga0129327_10004685
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7769
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1043
  • Long. (^o): -76.1811

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036713	Metagenome / Metatranscriptome	169	Y
F067765	Metagenome / Metatranscriptome	125	N
F078667	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129327_1000468511	F067765	AGGA	MPIKGKNNVIQFPRIYSNVPNSQEEVSEKIRDYKESYSSELAEIIWENVLGEMARAGCDFDEDFETYFPGMILIFEAIRSLHLQTMGTEHQLQPFALQNVVIMDSDEECVQGGLKKNLEETIDIDEDL*
Ga0129327_1000468513	F078667	N/A	VDRRAWSESEFKRHGVDDVRVHVYDRYEEGVSIPFIGEPEIVNAITKGVTSSHLLTIKWWLENTDEEYGLFFEDDVDYETIQHWNFTLEDYINKCNEYEWGALHMCNVFEYPYDYRNEYMPFVPRKRNIWDHGLQAYALKRWYAEKLVEYYFGDFEDKIHYRMPLGSAITTENNILHGFGLVISFPLFNHNVTDFRSKNIYFYNKQANTAVYSYEFVDLWWKKWGSDLSLEEVFDNSRCSAFIYGELTK*
Ga0129327_100046853	F036713	N/A	MGVFLGTYNGYDLGQEDDGRVYACFAANNPFGLTTCCSFKTERIAHNYIDDFFGARKQKHLTARPVLTDSEFPTVVELIKSGLGEMTFDMIDGLVAEGSQLIH*