NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10022769

Scaffold Ga0164294_10022769


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10022769 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5088
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (38.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016774Metagenome / Metatranscriptome244Y
F032548Metagenome / Metatranscriptome179Y
F036564Metagenome / Metatranscriptome169N
F044916Metagenome / Metatranscriptome153Y
F049419Metagenome / Metatranscriptome146Y
F064403Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0164294_1002276911F049419N/AMKLPKLNLLDLATTYIFFGLVYGTIVTLTWNYLFEPITFVHLSLLQGFGIHLIARILFSNTNTNYISNFYSQKTPDLDKIDGYLKQIQEDLDKEADEIEKQYEDLDKKD*
Ga0164294_1002276917F016774GAGGMPPKKPKIEFLTDHLASLNHWRDQLLALEKSYHSKDPEKERTCRNMLNKYLDDVLAYNKNIKEKPKNKV*
Ga0164294_100227694F032548N/AMKDNQEMEKAIKLLEELVIQADEDCPQDCRTMHFVNALEEASEFIMEYKNAK*
Ga0164294_100227695F036564GGAGMKLGRICVDLNYIVDIDNDEMVRHATEALYEDLMQGIKYGDLGNWIRVSEDKNATEDMIPEFLLEKEND*
Ga0164294_100227696F064403GGAGMINPRAKILSDLKRAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNPKYMADQFEFNF*
Ga0164294_100227697F044916N/AMGRKKVEKSRIEKGLEKEEKTFSVMAKKIIDAIKDEKELRAFAKISLEILYKDNPNLFLDHAKLKLNKK*
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