Basic Information | |
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Taxon OID | 3300013006 Open in IMG/M |
Scaffold ID | Ga0164294_10004240 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12555 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (65.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007466 | Metagenome | 350 | Y |
F026248 | Metagenome | 198 | Y |
F032154 | Metagenome | 180 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0164294_100042401 | F026248 | N/A | MKITAADEWAIHNRAAQVVFSLDDLSTVQRYNTKLNNHERVTEYAESLGAEMVVARYFGLDYDINVSNGKRNADVGKGLEIKWTSYINGSLIIYPNDREDDVAVLVVGRSPEYYIV |
Ga0164294_1000424011 | F007466 | N/A | LTQWAPVWRVKIAGVDVTDSVLASLNITSGRTNIYEQAQAGYCSLTLIVFNQAAIDYEINNTLSVEVQDTSAVYKPIFGGSIVDIAVSVSEVGSTAYTQEVTITALGALARLQKALTNGVLAQDFDGNQIETILRQVLFAQWQQVPAALTWATYDPTVTWANAGNTGLGEIDTPGNYELAQRASSRTVIYDLVAALATSGLGYIYEDANGQIGYADSTHRTTYLAANGYTDLTANQALGRGITIKTRAGDVRNDVTIKYGITSSSQVSDRDETSIGIYGELAQIINTTIKHQTDAEAQAAFYLALRAYPQPNFDQITYALTNPELDNGDRDSLINVFMGQPIALNDLPLNMSAGTFQGYVEGFTFRASYNELSVTLLMSPLAYSLQAMRWNDVPITETWASVSPILQWQYATIVS* |
Ga0164294_100042402 | F032154 | AGG | MGDFEMINTATGERLRIEQDGTELRDRVDPPTIEWCDRGQHFAPKYGGRDEYDILWICLECQK* |
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