Scaffold Ga0164294

Basic Information
Taxon OID	3300013006 Open in IMG/M
Scaffold ID	Ga0164294_10000181 Open in IMG/M
Source Dataset Name	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013006 Open in IMG/M

Scaffold ID

Ga0164294_10000181 Open in IMG/M

Source Dataset Name

Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	60404
Total Scaffold Genes	93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	66 (70.97%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

60404

Total Scaffold Genes

93 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

66 (70.97%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.008	Long. (^o)	-89.701	Alt. (m)	Depth (m)	4
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.008

Long. (^o)

-89.701

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F002515	Metagenome / Metatranscriptome	552	Y
F002935	Metagenome	519	Y
F011386	Metagenome / Metatranscriptome	291	Y
F021757	Metagenome	217	Y
F022197	Metagenome / Metatranscriptome	215	Y
F025743	Metagenome	200	Y
F034573	Metagenome	174	Y
F093851	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000018118	F034573	AGGAG	MYRISKSVTKTKEEKVAEKIGVLLSDFNLDLEKVGVYMSRSLPYLIFRRSLEVLESAQFQLDIVEQKRVEYNSDRLF*
Ga0164294_1000018126	F093851	N/A	MLGYISTDVDDMVYALDSVLTTINSNDDPWLYNNTWRAKELLQGLQVEGYFDNVD*
Ga0164294_1000018128	F022197	AGGA	MTTTENIENPEMYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIEENVFLPELGEWHTK*
Ga0164294_1000018129	F002935	AGGA	VRERSKGYLGQIVDGKKLAVIANGIYNLQYSSDFSECTVDNLLFVTLEEKNVFGDNKYALVCTEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTADIADYIRVFGSRLDDNCSLWQSKMSVA*
Ga0164294_1000018138	F002515	N/A	MNTPKGPEELRRLMELRRSNAASAVPSKKVYSRKGKKCQSLMLELKKESE*
Ga0164294_1000018140	F025743	GGAGG	MTATMETMKFVYADLLTPAQLMVGDLINVDDDIVEVLSVVDDATGDNYIVTHRNDFGETYETACTFEDMFKLYVFIDEQ*
Ga0164294_1000018144	F000808	AGAAGG	MEYNYSLTASYDGVLYFTMRTADLMEAVDAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGEVTVK*
Ga0164294_1000018146	F021757	AGGTGG	MPMSRKDYVAVSDILSSYKDLIGDEFTYHDLVDDFAAMFAEDNKNFKADKFFEACNISVY
Ga0164294_1000018154	F011386	AGGAGG	MKVTLTSMQGNTRNIELMSKQEVLDFIDLFKLTLHANQRVKVTCDLLGIDGYLQGVS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164294_10000181

Overview

Ecosystem & Geography

Associated Families

Sequences