Scaffold Ga0164294_10000038

Overview

Basic Information

• Taxon OID: 3300013006
• Scaffold ID: Ga0164294_10000038
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 146996
• Total Scaffold Genes: 177
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (24.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016772	Metagenome / Metatranscriptome	244	Y
F052416	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000003810	F016772	N/A	MIGCATTPSGGGKDSPQTAVESALPYIAPAVTLACTVVLEQALTPEDKVEKAKMINHVAAIVESLTSGTAPSPDQLKKALTDYLPVEKTHWVNYVTAVKDIYAAQFTRVDGNTKLAVDVLHAIAKGCKDATEQYVN*
Ga0164294_10000038141	F052416	N/A	MDFIKPVIITSPISGEPVRPTLKTYIRGRKEVVEAEYIDPASGTFIRKGVVSVRDIPSATQDKKE*