Scaffold Ga0164292_10184724

Overview

Basic Information

• Taxon OID: 3300013005
• Scaffold ID: Ga0164292_10184724
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1496
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007918	Metagenome / Metatranscriptome	342	Y
F010534	Metagenome / Metatranscriptome	302	N
F036561	Metagenome / Metatranscriptome	169	N
F042163	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164292_101847241	F042163	N/A	MNLTVKIIEQVEKKLEAVLRGIYDNRTIWMYYKVSLQMLRDILEDLIACHHTTHPLAEKDLYYERNKVQIVDWIQWIQNRTSSDKLVDL
Ga0164292_101847242	F010534	AGAAGG	MSDKVGEKQESIMNLIDQQIKGALKDQASRLEILQDRIKDAIEVGTTEHSQGIKQVMLFVTKAHVQAWITSLKHQIDIAGDCEICDLEKILGEESLEIAEAVKIALSNRNEETRSRILRELLEKTITKIEALSVRVSQEPQQ*
Ga0164292_101847243	F007918	AGAAG	MCDTTLEESDPFLNLEQDMEAGINQELLSIKQELLSILTNVETLTEAMNRVILKEEGRREQFKILCSSIDHLFGENIEMIEKRKDDLKEIDPSLHAMDCKLSTRMTRLRNVATKPDFKSMKTEMKKVLSQQRIERLQTNPQQEEQRPQKG*
Ga0164292_101847244	F036561	N/A	IYKEIKRRKEFRSLLASVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLAQMRTLIEDIYDWKVYRQSRSEKEMENLQPIAAAEEKADLPESLEVV*