Scaffold Ga0164293_10473200

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10473200
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 831
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001981	Metagenome / Metatranscriptome	608	N
F029089	Metagenome / Metatranscriptome	189	N
F038589	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_104732001	F001981	N/A	MTYPTLITIPKSDICKAEIALIAQQLTDRINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFRAFGAEITLKEGSLTPNYEEDAVYADLKAQLKAREELLKMAFRQAGKSAIFDESTGEQVP
Ga0164293_104732002	F038589	N/A	MNLLQQMNADEFRKLLEYKEKYPTLGEELVKALTDKIVIIHLTVAEYISLCDALGIYCAPALTQVFQAFKSKP*
Ga0164293_104732003	F029089	N/A	ANANLLDLNDKLGLVPSYDELTTATLKADFLALLDKLPKEQHDKFMKDIDHMTPARFEKGIQFIQNQLARQ*