Scaffold Ga0164293_10211495

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10211495
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1393
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F007570	Metagenome	348	Y
F013404	Metagenome	271	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_102114952	F007570	GGAG	MNEDIKTIKQYIKTFNDRRLKEEYNLYTSIERPTILENYFKDFIKKEINTRGIGV*
Ga0164293_102114953	F003803	GAGG	MKKEKTLLRFRIYDGDREYTDYAIIDNKQLLTLNYKEIISKFFYDDKVNDEQFLSDGRAVRVESEIPINDLDVKKLENLSMAFLHDFKIKEIT*
Ga0164293_102114956	F013404	GAGG	MTTIIDAVKKLDETIARQKSIANKLVEEHKQLQEALAIVCCNADEDCPLEYRTEHFKSAITDGYDLLKKVGYFKNK