Basic Information | |
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Taxon OID | 3300013004 Open in IMG/M |
Scaffold ID | Ga0164293_10131634 Open in IMG/M |
Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1881 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012971 | Metagenome | 275 | Y |
F016392 | Metagenome | 247 | Y |
F097250 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0164293_101316342 | F016392 | AGGAG | MTTAFDYKGQPSVWLTDQKMKRYIQGDNSAKKRQEKGDINDKNQVLIYSKSSSDKK* |
Ga0164293_101316344 | F012971 | AGGAG | MMIDLEREKWMALQDINSEDVADAICDSLAIVEAIQSNAWADVADMVRSRVELKAERLAQTALEIPLTPWVDSDEELQVWRYYRMELQREAIEQNKPKLPKINPYHSEASNEN* |
Ga0164293_101316345 | F097250 | AGGAG | MSITVRSALNLATQQINVAMTRFLSYFQIWTPTLSLSERTKLRQKAAKRLKEKPKTQRVVMPSKLITDPTFGYVNSALTNVQDTWKKHSTGVKNAGLFNNPNADRKNNKESGGEVPTQKIRRVQ* |
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