Scaffold Ga0164293_10057674

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10057674
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3101
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F018352	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1005767410	F003393	AGGAG	METIENDDIILVMDYVKVDILTAGQLEVDDLILVDGEVVSIVEIISLPDGYTLEIINDFGERETIEVGEYDQFDLMMLQ*
Ga0164293_100576743	F000447	AGG	MGFIEIFRLDENGAGWVDLSEATPSELLDLEIGLFQEGAL*
Ga0164293_100576747	F018352	GGA	MGKFKESITTILTCSWCYGQGWQFVGNDVDYDVWACECNPYNIPADEIQEYHQLFKTKENA*
Ga0164293_100576748	F000808	AGGAG	MEYNYSLTTSYDGELKHTLRVNDMLEAADAWSKCVDFGDAKEYATYNLSDPIGKMYTKTFYRNGEVVIK*