Scaffold Ga0164293_10056881

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10056881
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3129
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026798	Metagenome / Metatranscriptome	196	N
F038078	Metagenome / Metatranscriptome	166	N
F039102	Metagenome / Metatranscriptome	164	N
F045533	Metagenome / Metatranscriptome	152	N
F045559	Metagenome / Metatranscriptome	152	N
F088787	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100568811	F088787	N/A	TFINEANKAKVEKFRGFISDLLDFAKINITKTLVIVRKLRARSLLYLIPLTKDLIMEQKHIKKLVSSSNLEQVKELLKEYRRTIRRRVSRRYSI*
Ga0164293_100568812	F039102	N/A	MNKDQEKEKLIRNLFQAVDNIDSTESKETISQAATRIYHLKREIVKIDPTWRVRDPYNYYVHRILSLLDGIDTRENPNVHNNQELYLKLFHETRMIRKTNQSWRLNVPRLVEFMTETSKVTHPNKIEPMETEEVPKPSSSN*
Ga0164293_100568813	F045559	N/A	MDLTPENIKQTTQASELRKDVAKENYKYVKLTGISNVINSLHSTDFSNEPLMHDRMNRVHILKWKIKNVDPNWHLTDQVTLMEHQILDLLDGIDHMKPWNEIGNKLKYLALFSIIENLKKIHPRWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPETERLDGSS*
Ga0164293_100568814	F045533	N/A	MAEKPEDNILSSDQRPANEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITRIDPSWSFYDSNDYLINKILRYINAINSNKEWNHEDNIKLFTEVRRDMIVLKEHNAYWFIDKSSIESHNPFLCHGCRKLKEEK*
Ga0164293_100568815	F038078	N/A	MAAKGDKCTVRMKKSKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKARVLANSEYWSLVDYIGMTIGRIFRCIDTINVEEKWDSKNNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYSTTCPCSQCSIEEDRDDTISSIISKLNI*
Ga0164293_100568817	F026798	N/A	MDKSKEKLIFHNCTEESSKSKRGNNVNINKVIDENNQLTAIEKLALRRGIERVNRRRDSQQAKIIKLVNSLNDKQNFQDMNNQLKLQILFNTVLKLKRVYPSKSAMWKAPNNNTLPPYKSVRLENKLLKRGLRKKCSSYPNKEKKIENWYKLMKVQESP*