Scaffold Ga0164293_10037567

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10037567
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3987
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029678	Metagenome	187	Y
F040479	Metagenome	161	Y
F066470	Metagenome	126	Y
F075748	Metagenome	118	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1003756710	F029678	GAG	MSKVTGFTIFNKVTGQKLATLPLSIPIGATVDAYKREGHDVSWGWEESNG*
Ga0164293_1003756712	F066470	GGAGG	MTDLDRRIATAKRSAVIYRNYRRARERALTRLSNHYPETYKELLEQEKISDEQLGKKWLDIDGSTDATDSVHTDPTSASTRGSEEASTSENQSNDGGEA*
Ga0164293_1003756713	F040479	GAG	MGSRENVRSHFGPVNPASTTLLAQETLVANQLAQLSVLLSSLESVVENLNYKSFTLYDTLNTAIEEISAVLSDTLTDVDGTEEDLLQ*
Ga0164293_100375672	F093237	GAGG	MPYKYDLGNTRDMSSQELLNALLAREIAPRTIVGTGYKNGRQVAIDYLKERIAKEGEGE*
Ga0164293_100375676	F075748	AGGAG	MLSKREILEIIDTTANFNAYIEGMDSLNGQSLDLITQVAGVDGEEWSDEECLEIVKEIIDMTNAYRNTHDWED*