Scaffold Ga0164293_10035592

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10035592
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4106
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031764	Metagenome / Metatranscriptome	181	Y
F054858	Metagenome	139	N
F058818	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1003559211	F054858	N/A	VMNKKEQRMAITRAFREKLVETQGKEFSFDEDDVMLIFDFIKGGVVYKGLEYHRGMNEVFNPVSRWADGHGDNTKHFAYEAICDMLNDELEEIRAKVQEQAMFEKINKGLGIAK*
Ga0164293_100355923	F058818	N/A	MIKELLEKQEILGDIAAELYGDLWIMNEKFWGSPTERELQEVTMGLMNLGYTVEPTPEQEEAAKIIAKKFGFELPPED*
Ga0164293_100355928	F031764	N/A	MTNKNIQSTISKVHANISSLFSKEDVIKLLTELDTEIRNEDPKPQIDRDVLLTTFRQMLSEKDWDNVVDKDDVELSIGYNNQIEIDRIAIDEDFLISETVDALEALLDVLEGEVD*