Scaffold Ga0164293_10024940

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10024940
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4987
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin139 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028461	Metagenome	191	N
F088542	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1002494011	F088542	N/A	MAKKKSTVQYKDRKYNYPKGFTKYGKAKTGFMPAAQGARVFVENNLEKIQKGTIPYDSLTQREKRVYRGKTSNTFANTFTFKDKTYYDPTGVLRKALDNLPALKGKRNLTNLLPEKDFKDFFDQRINPTKGKLNEKDRSKWLEFSSSLYDFNKGEKTKFYRDESGSLMDIVTKLNKARKQGREIRVIDTDGSIKIGVNAIDRMREFEAEKLKEFTDKAKPGQNIQLQIIYISTDWNPYTNTVTFNLNNVQVNDLNKTP*
Ga0164293_1002494012	F028461	N/A	MKKQNAATMFKNPQLQESIIRQYKEAGLDFTVKHSNYNTQIIGQESVLKFVQTEHSIRVFIAYNKIVKDLKASDRTVEILQGDWSTENFDSKNGLKPCKLNSVLNLDITSAYPYCLFINKLITLDTFNYLMQLPKNERLPAIGMIAKKSVWIEYKKGDASSWELKEGEYANIFFFVINHISDLMDWAAEIAGSDFLFYWVDGIFLRPGIKKAKLNEITRIFAEQGYYYKYENVKDFSVVRDGDK