Scaffold Ga0164293_10010392

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10010392
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7815
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F001460	Metagenome / Metatranscriptome	690	Y
F004666	Metagenome / Metatranscriptome	428	Y
F014250	Metagenome / Metatranscriptome	264	Y
F020171	Metagenome / Metatranscriptome	225	Y
F049621	Metagenome / Metatranscriptome	146	Y
F095357	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1001039210	F001460	GAG	MLGYTLDDLNRMTNAVHDAKLFYLRYPSDLMDKTELRADLEMAVSFLQGLWAEGYFDHA*
Ga0164293_1001039211	F020171	AGGCGG	MAEQFIDTIAEHIIGAMQQEIGEDLFDQWSNKNLDEGVEYAEYEFMQYASPELKQQYNVYYGYVEGDEYYLC*
Ga0164293_1001039213	F000450	AGGTGG	VGDRANFGFVQPNGNTVVLYGHWAGYQMLGKLADAVIAARPRWNDSSYATRIAISQIVGDQWNAETGWGLHVNEIGDNEHKIAIIDWDQQTFSLHEWAPHNDLDNKVRGMKNDAIFTMDLSAFCEKYALEQILTV*
Ga0164293_1001039216	F000311	GGA	MYFELTAPDRLSMEMAYWDAQITGLDPQAMSPLTFNIGTGSIEKVSKIRDKYNLTESYTSDYEPTGYTRR*
Ga0164293_100103922	F095357	AGGCGG	MATSKEIKIGELLANSVEDHWFNPATLGHYLSQQPHWTIDRVMEVVCWIIEKNAGVYKDKAGKQDVSEGLVLAYKLDQLVDRIKESNSFNHIKLP*
Ga0164293_1001039220	F049621	GAG	MADLKYFNSLMLLVTGDEAEKKAAKEYLAEVDPDIWDQEK*
Ga0164293_100103923	F004666	N/A	MITKGSIDMTTKREFLKSKGITVGRRGRFSSAATKALQDAEDQGIKFTAELKAPKK*
Ga0164293_100103928	F014250	GAGG	MYSDILEPRLQKLIDLGESGTDIMHGELKNLMLEAETQLGLAQAYEDETEEAIDSMERKYWEGQLDALAHVYGLTYQLAFAISERKKK*