Scaffold Ga0164293_10008610

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10008610
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8589
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F040626	Metagenome	161	Y
F041183	Metagenome / Metatranscriptome	160	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y
F101171	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000861011	F058142	AGGAG	MAEVTYSVLNEPTVTETQISDVLKRDIPTAWNIPIYSDFPSDSEKVRYGVYVSDVHTVSRNPHQLGIQYCGAIYHAIDEFNVTYISYQDDPYNVAINAIIANLVTAIKDDGEQLMSGYFERNFDQVRTYGPTQAEKHTWTFSLTRLEFNT*
Ga0164293_1000861012	F002260	N/A	MSKGNNNMSVPYQRISNATVADVQFYDPAAERRAAALQVDWAPYFKVASQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKNDQTLIRLDTFGAILVFYESLVTDVSNMNEVDLQNYEFAQKRCENEWTKALQLMNFYDLYMDSPNGPTTKLEENWTADVDYFNGDRRYF*
Ga0164293_1000861013	F041183	N/A	SILDCIRLIKQNFKVARMPGTPVIVMDSNGDAQTQSAYTGGQVGSSLNRLLAELTGGAVSQSGGSNLSALGNELLSTGKIESVYGCMVMFTTFLQDATRTVVGQASLPVLVGAYMGDSAIFTVMKEGLQLKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINILQN*
Ga0164293_100086103	F101171	GGA	MENIPAVANNKPLVNNAEFVKLTIYNEYGNTANNNVYTFSSSYQSETIDGVTYGPLGGLLAVGVQQRDIRVTSADTSISISGIDGNNMAVVLGTLIRGSKLEITRGFYDNNYVLTSNAHRFTGIVTNYNISEERQDQDDNFTITLNASSFKSVLENRIAGRKTNSESWKEYNPTDTSMDRVPSLADRAFSFGVEPRQGPTTQSQAATDASQVAQDTNTNTFVDRY*
Ga0164293_100086107	F040626	N/A	MALILTIDSLGKRYGMLPSEVLERSNTFDLYIMDASLTFENYHHKKAMNNGVAPAPDYSTDELVAMFNQNKD*
Ga0164293_100086108	F058146	AGGA	MKLSQLTAKPQLIDVHIDDEDTIKEFGEPIQFYTWDRQPMDVFMKLANASGQDTGGIISVVRTLILDEKGKEILKDDAMLPTHVLMKAIAKVTELLGK*
Ga0164293_100086109	F003807	N/A	MTQQEQVWYKTNEEKLRSLIADEAKMMPMLDNMQATIKQLKAKQAFRLALLNQLLEDLNENE*