Scaffold Ga0164293_10008205

Overview

Basic Information

• Taxon OID: 3300013004
• Scaffold ID: Ga0164293_10008205
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8797
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F009147	Metagenome / Metatranscriptome	322	N
F009398	Metagenome / Metatranscriptome	318	N
F037116	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000820513	F009147	N/A	MAVQADISTEYSMGREGFALVTTTAAQTGNWAGLIPTEPTVFTSITGFGISGTWTSKTIPAGFPLVGNITGFQISSGSVVAFLARS*
Ga0164293_100082052	F006107	GGA	MNAVALRAELAVADYLAAANWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEIEIAVELQLSADDTDEAAVLTTVQVLDNRILPLFDDTGASALNAPSNDPSGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATT*
Ga0164293_100082053	F005024	GGAG	MTVDSGKFDLAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRVGTSRILRRVHLIVQAKAAKNPTANLNGGHGLYGKRMKAAASALMKRSIASVGYLRSAVVKSIRIYNRGFTQFQSPKWKPLSKPASYRAPKKTNSALVAMANEYGLPQENVSIHKGTVAHGFQAVPGFNPTAFVSMRTGVADNQYNRVAQIYNEAMQKAMDDETTEMVNHMTEALLANGKVLEDNGISIK*
Ga0164293_100082054	F009398	N/A	MTTIGSSLQQGMAVLQQMLGAPMFIWQGTSIRCIPAAVNDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFVLQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK*
Ga0164293_100082058	F037116	N/A	MEPTNSSTSPGLSLAAAAGATAVSFIPALTDWVRLITALIGLACAIYGAYRLFKSK*
Ga0164293_100082059	F001272	N/A	MINIELTQEQANSLLQLIDIAVKAGGVANARAALPLVDLIVSSAQPKSE*