Basic Information | |
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Taxon OID | 3300013004 Open in IMG/M |
Scaffold ID | Ga0164293_10002520 Open in IMG/M |
Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15530 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (6.25%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010316 | Metagenome / Metatranscriptome | 305 | Y |
F031383 | Metagenome / Metatranscriptome | 182 | Y |
F032190 | Metagenome | 180 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0164293_1000252012 | F010316 | N/A | MRPLQLVNPIDLIHGKTYLIREKRPEYAHLNCKGTFVKNDYPQHPFQCIITHFTNVICKNNQSSLDIGLQDTYWNYYEADAVIRAYTNHVLREITGDPSFMIP* |
Ga0164293_100025205 | F032190 | N/A | MILEERCYVVYGKGFKPLKIKGFENRNKLLESLKVKGFKPKSSLLNCSSQNGKKCKTTPTFY* |
Ga0164293_100025207 | F031383 | N/A | MEILKKLPFDLQEHILVKVMKRYKLRDGKYVRQIDKTKYTFLEYIIRPYMNKNSYKSFHCLFNNDDDGEDEDRDFYHYKFYIKNLYDHPLRKESRVDNDIVDIRIEHKNNTYCYEVSIYRLKMKNKDENNFTPEKKRKDIYHKGPLAENYFWDFLEFSYKVQ* |
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