Scaffold Ga0157360_1007078

Overview

Basic Information

• Taxon OID: 3300013000
• Scaffold ID: Ga0157360_1007078
• Source Dataset Name: Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3885
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Bivalvia → Autobranchia → Pteriomorphia → Ostreida → Ostreoidea → Ostreidae → Crassostrea → Crassostrea gigas (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location

• Location Name: Brazil: Ribeir?o Preto, State of S?o Paulo
• Coordinates
  • Lat. (^o): -21.165
  • Long. (^o): -47.848

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016096	Metagenome	249	Y
F091123	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157360_10070782	F091123	N/A	MVHVELIIPKPSVWSMENVVNTFLRSIERGQIGLRTVIHFMLGLIIAWFLNAMGPDLPINMWSLTVLNFFFSLIVISMLRSLLDWELLSI*
Ga0157360_10070786	F016096	N/A	MNVRQLTSEQWEELFEDLLALKDVVPIEESCPLEEEEDFV*