Scaffold Ga0157150_1022905

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157150_1022905

Scaffold Ga0157150_1022905

Overview

Basic Information
Taxon OID	3300012992 Open in IMG/M
Scaffold ID	Ga0157150_1022905 Open in IMG/M
Source Dataset Name	Pig viral communities from ears skin of healthy adult pig - Individual 0
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Autonomous University of Barcelona
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1018
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Skin → Unclassified → Unclassified → Pig Ears Skin → Pig Viral Communities From Oral Cavities And Ears Of Healthy Adults Pigs From Denmark

Source Dataset Sampling Location
Location Name	Denmark
Coordinates	Lat. (^o)	56.0	Long. (^o)	10.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048027	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157150_10229051	F048027	AGGAG	MTKKVTETKKAKFSLDTRVRLVAENEGGKGVKMPVWFNLPQHKELRQQHIDICKGLVALSVANDNYPITYLVYFAVGKNAHRKEVFEDGYTRFDEKKAEKIFSWLKLFAKYHKNAKLFRNPNVAHALCRFYDKFSTKTKDFKAAMELMESNPKVDVKNAKAIVDGMGIAKRTEESELAEAETAMEPAVVTA*

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