Scaffold Ga0159060_1008072

Overview

Basic Information

• Taxon OID: 3300012990
• Scaffold ID: Ga0159060_1008072
• Source Dataset Name: Tailings pond microbial communities from Northern Alberta -TP6_2010 BML May 2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2731
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Wastewater Microbial Communities From Base Mine Lake, Ft. Mcmurray, Alberta, Canada - Surface, May 2015

Source Dataset Sampling Location

• Location Name: Canada: Alberta
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000706	Metagenome / Metatranscriptome	926	Y
F002934	Metagenome / Metatranscriptome	519	Y
F004050	Metagenome / Metatranscriptome	455	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0159060_10080724	F004050	GAG	MAKKKVIDLDTYSRLDQYAISMHEFYKSLRRAGFAVDLCLAIITDRDAYPDWILPSIPDRVDRLPYEDDDED*
Ga0159060_10080725	F000706	GAG	MSDMITLYFASLAVIGGLAGYVITHLLSEIKRLNSRVDEIYNILLER*
Ga0159060_10080726	F002934	AGGAGG	MNMKHPVFIALGAFLAVWGTSSNFDLDYRAVLGAIVAGVFGYASPKK*