Scaffold Ga0164305_10066994

Overview

Basic Information

• Taxon OID: 3300012989
• Scaffold ID: Ga0164305_10066994
• Source Dataset Name: Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2178
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Mt. Pleasant research farm, Cornell University, New York
• Coordinates
  • Lat. (^o): 42.4531
  • Long. (^o): -76.3842
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008790	Metagenome / Metatranscriptome	328	Y
F018651	Metagenome / Metatranscriptome	234	Y
F067623	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164305_100669941	F018651	N/A	FRQIMRDAEVANAIVPVVRQHRLTQAATEEALRELAIPRAANIARICVSLGL*
Ga0164305_100669942	F008790	GAGG	MITPILRSKDAMATWLIDVAGNVAISISDLALLKRIQSLIIPAFGSTEEAMLWGSDLNPEQRATLLDMQRSVSNAARAEADPQRMVNLATQSQMMREAGEAAPFDGHR*
Ga0164305_100669944	F067623	N/A	LKDVIKSEMETAARQRSEIYFMRHKASRRRAVLFRQLRASATNQICDLKQLTLGNTYVTQELFSGQRLLKGFAP*