Scaffold Ga0164306_10008006

Overview

Basic Information

• Taxon OID: 3300012988
• Scaffold ID: Ga0164306_10008006
• Source Dataset Name: Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5315
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Mt. Pleasant research farm, Cornell University, New York
• Coordinates
  • Lat. (^o): 42.4531
  • Long. (^o): -76.3842
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029257	Metagenome / Metatranscriptome	189	Y
F101974	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164306_100080065	F029257	N/A	LLGAALLSGPAFATDFSEDSNFGGTYRYIGPGVASLPDVDVDVGPLGAGVYVEPGVAFMSPAMDYAVPASTWAPVYPQAQLDVVPPDATGGDIEVGHPAMGVDSGQ*
Ga0164306_100080066	F101974	GGAG	MFDRSGRQELAWASLTAGATILVCAGVMLMTAACGVRVSAQDFPVLKLAGPEDK*