Scaffold Ga0168317_1002012

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0168317_1002012

Scaffold Ga0168317_1002012

Overview

Basic Information
Taxon OID	3300012982 Open in IMG/M
Scaffold ID	Ga0168317_1002012 Open in IMG/M
Source Dataset Name	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10241
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings → Weathered Mine Tailings Microbial Communities From Hibbing, Minnesota, Usa

Source Dataset Sampling Location
Location Name	Hibbing, MN, USA
Coordinates	Lat. (^o)	47.432362	Long. (^o)	-92.940835	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046434	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0168317_10020124	F046434	GGCGG	MQTQDIISAVTVLFIVGMIWLRTRVLYTREVRGGLRLQRAGKIYFAAVAAVLVSGWLVAPLIGRLAWPDTNVTPLLLRVIWFLATYYVFILVHRILKIKGVEVYKAAT*

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