Scaffold Ga0134087_10012098

Overview

Basic Information

• Taxon OID: 3300012977
• Scaffold ID: Ga0134087_10012098
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3002
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005778	Metagenome / Metatranscriptome	390	Y
F090796	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134087_100120982	F090796	GGA	VRNLVTAIVIVLACVAGLWLASVDARTDDTGIEAGLIFLIAAALSAVRPRAAILIALIVGTPIPVVEAMRTSGLPGGIAALGFSFAGALVGAYLGIFVKRAPRPT*
Ga0134087_100120984	F005778	N/A	MQVSQVAYDRFVLELPPADATWRPLADPECLAETAAWLWDFGPKPLIAVIGIDKATPSWLAAYKPRGVRFAPGGASAGVAVVLAKRSDLERFLSEGAPHEHTVLLWPRVSDVKTFEALNGAPNAWLKTVDGHATIQRGGEVYEVHSVVA*