Scaffold Ga0134087_10004751

Overview

Basic Information

• Taxon OID: 3300012977
• Scaffold ID: Ga0134087_10004751
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4343
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003152	Metagenome / Metatranscriptome	504	Y
F009387	Metagenome / Metatranscriptome	318	N
F056478	Metagenome / Metatranscriptome	137	N
F091770	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134087_100047512	F003152	GGA	VEFDHWLYGAVSGTGYTTKAVSKGLDAGLYDQYLRGHYTPIRAATAQSYEDPIDLHMIHPVHGGREILLSRITRGPPDEAGRPTFANHTIVGRTEPLRSGLITLDSVFRAMGEFDRKAPDVMGEMPPLEIPTRSEEERKAPFGLGIHRHVTFPALETLATRIMADATSRTLLLCRNTTPEARNATLHLVFELLCWGCGLPILTAISETPRSSAMNFFNLVVAPRGVRADSSWAILESALAEPVLPRVMDRDDVYQRLTTIVRQAPGLPLAR*
Ga0134087_100047513	F009387	GGA	LIQQLLKSVVVVVLVDCSKMTTEIDTPAYKKMLRYDSTVAKLLVAFQTYKRQEYDRLKDSGVKADAPRIYPAFVLSKFDTISDDVLARLGLHRGFPENKRARKDYAEALLRVFVPQTLSQIRGGKIAGVSMDKAAYFLSWVRTEQHEGMEPVGQPRIVRTGFAPEGGGEPDFSYDEYVEFIEHFRDIAHKIPDEVLEAEKFQAQALARAA*
Ga0134087_100047514	F056478	AGG	MPCALLGDRASGKTTFLGLLYAAQVKYGTGVQDDFRFHAPMGSLSLMSAVYEGMKDARFPSATLKEEITELGFIFGYLRKVVGKLPYYVRQQNWVRPFSTLRFSA*
Ga0134087_100047515	F091770	N/A	MPHVVIVGDRESGKATFLSLLYATQVKSGSDASDAFRFHADVDSLDEISEAFEQLMSGSFPDSATKEGMRGITFHLGYRRAGRGFLSRFRSRGWDAGGSIALHFILIRNVEEEMSRFRRGSSLANADLREVLESDAVAILVDSTKLGHRPEDGTVGTMDRYDTAVESLLSSVQRSRPRGSRRPIHPIVVFSKFDSVNPKVLHEANLADAPPDVKKTGPRSAYAEALLESSLPRTIERIRARDRDASPFAKPSYFFSSVRTEAATANRGAKIRLRRTNGAGWEPDYSADEYLVLLERLWKIASDATA*