Scaffold Ga0123351_1023509

Overview

Basic Information

• Taxon OID: 3300012973
• Scaffold ID: Ga0123351_1023509
• Source Dataset Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Day 36 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3233
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Source Dataset Sampling Location

• Location Name: Point Reyes National Seashore, California, USA
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051611	Metagenome	143	Y
F066313	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123351_10235094	F066313	AGG	MKEKFQKWMRRNNMMFSAIAGETFTNAEVVYTHIGLVAFLIVLGLAG*
Ga0123351_10235096	F051611	N/A	MVVDKVTKEMLFKLNVGDQKVFTLPNYGKARSAQSYANSMKKATMGTKEQRVFKAVIGDPNPDNGQCGVTITRIA*