Scaffold Ga0134077_10004661

Overview

Basic Information

• Taxon OID: 3300012972
• Scaffold ID: Ga0134077_10004661
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4176
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014199	Metagenome	265	Y
F100582	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134077_1000466110	F014199	N/A	PKAKPKPEKKPATPSTSRVLPMELKIGDRLVDETGEREVVGRPYTTAGGKNARVRVQRIGEPGSHHLRTWGAHERISVKRTTAEEGKR*
Ga0134077_100046614	F100582	AGG	VSGTFDVVINAPGNSSVHVPDLPVINGTFSGKVDLSLAVLHHIPLGSITGTFTIMRTADPATGTQGDLPQPVVLPFNGTFRMPFKLGGQGRFERSQRDHAAVYLADDLHTVIPVKAFERSTGFPDVRLEVNFGF*