Scaffold Ga0163111_10021176

Overview

Basic Information

• Taxon OID: 3300012954
• Scaffold ID: Ga0163111_10021176
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4718
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 0.8736
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F019646	Metagenome	228	Y
F040582	Metagenome	161	Y
F053980	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163111_1002117612	F019646	AGGA	MSNNFEITYTSDCCGAYVHSDAELCPTCLEHCEVIEDRVDYDCSEAVHAAQGLDYFSA*
Ga0163111_100211763	F053980	GGAG	MNGYELLAQLKKDVKECFTVPNDWLPEEFRDHRSDSVSLADVERKCDARDRCTLSSFEEEAIERAKRVQVYRSQNDRGLEITYLPR*
Ga0163111_100211765	F018906	GAGG	MKTCKVNPLKLNETRFEAEAHKGGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAVLKYPLGTDPEIMSEIIYDEPINEHLGIVDVAGWLDFCEVADILQKIRNYNTGEYKI*
Ga0163111_100211766	F012114	AGGAG	MKNRDYYNCVFPEVRRNVWVVYDMDGQKIGEVGAMSENEARQKVADHVMIPFRLSHVEE*
Ga0163111_100211768	F040582	AGGAGG	MGFISVDFQSIVIGYAVGVALMWSLNEMLYGDNNEQRTETDCKHTRPRYDRRYNMLHGDTPE*