Scaffold Ga0163179_10941025

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10941025
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 750
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020878	Metagenome	221	N
F028626	Metagenome	191	Y
F058908	Metagenome	134	Y
F077796	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_109410251	F058908	N/A	RETKKGGIMTKEEAINFLYKDWLNYKKYYKEKKDFNMKETFIEYLEREIPEYIGNKGE*
Ga0163179_109410252	F077796	AGGGGG	MEYQIPCDQCDITEDESKLIETFDNQLLCSSCYVKQEFKIESED*
Ga0163179_109410253	F020878	GAG	MIIKLFDKQITINNKKWKQDLAAWSLLHRTEIVIAIASFILGAIIF*
Ga0163179_109410255	F028626	N/A	MKKKQEEYKPDDRICIFYVTDRIHELQHIKDHNKLKKAITEFKDELLHNIAIDVM