Basic Information | |
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Taxon OID | 3300012953 Open in IMG/M |
Scaffold ID | Ga0163179_10042960 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3090 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | North Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 34.876 | Long. (o) | -13.1352 | Alt. (m) | Depth (m) | 80 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012114 | Metagenome | 283 | Y |
F018906 | Metagenome | 232 | Y |
F040582 | Metagenome | 161 | Y |
F053980 | Metagenome | 140 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0163179_100429602 | F053980 | GAGG | MNGYELLEQLKKDVKECFTVPNHWLPLDFQDQRTDAVSLADVERKCDERDRCTLSSFEEESIERAKRVQAYRSQLEQHGEISYIPR* |
Ga0163179_100429604 | F018906 | AGGAG | MMKTCKVNPLKLNETRFEAEAHKGGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAVLKYPLGTDPEIMSEIIYDQPINEHLGIVDVAGWLDFFEVADILQKIRNYNTGEYAYNE* |
Ga0163179_100429606 | F012114 | AGGAG | MSNNNCIMPKVRKNVWVVYDTQGNRIGEVGAMSETEARQKVALHVMIPFRLSHIEE* |
Ga0163179_100429608 | F040582 | AGGAGG | MGLISMDFQSVVIGYAIGIALMWSLNELLYGDNNDEERTEKDSKNTRPRYDRRYNMLHGDTPE* |
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