Scaffold Ga0163180_10263042

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10263042
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1209
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F022555	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_102630422	F022555	AGGAG	MAITPKFKPGQLVKYGHPNHDFVGLVKSTQLARRRGDPVFVLVQWCGKYRQQEEYIPQSELKLVEGS*
Ga0163180_102630423	F006383	GGAGG	MHDKMWAVQQPGTLLRGRSSHQYGQLALVLEGAWTKTRTSNGYPPRRYVKMQWVATGERFEELLVNAHNCFDIVSSCDNIKTEEN*