Scaffold Ga0163180_10025452

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10025452
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3413
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016003	Metagenome / Metatranscriptome	250	Y
F037740	Metagenome / Metatranscriptome	167	Y
F040615	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_100254521	F040615	N/A	MLLCRPIVVPIKNTNDTMVSTDMCRIVTVSPTNDSSRYVIDIVEDAPEIKITPPDS
Ga0163180_100254522	F016003	N/A	MKSIYISIKMKSIYKICIDGELDELKKRRNEIYEIIEDIPNDGDDLREDEDDISFAAAYCKDHDTALEIFKYLYEECGYPRHCVHYAMVGAAASRNAKLTNYIYNDVDEHEKEEFIGDLEDELAMTDHPNPRVFIEYALFELNKV*
Ga0163180_100254527	F037740	N/A	MVNNNTERNRKKLEEYINSKNKICNGLDKKMFIGQLGKKSVNEIRENVDKEFRKQQLRFLGRGCGNGINLRKSQGGKKSFFSKFKRVKD*