Scaffold Ga0163180_10005245

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10005245
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7176
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003020	Metagenome / Metatranscriptome	513	Y
F015532	Metagenome / Metatranscriptome	254	Y
F047731	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_100052451	F015532	GAGG	MSLIKENEKVRRQIPNRMPSATFTLPIDGRRVVGIVNYDVTDTGIIPMAFWVKLKPTDSYLDRE
Ga0163180_100052453	F003020	GGAGG	MPDISKFKSVSVSMDTHAKLQNMAQSRFEVPVSVQKVIEFLLEKETKKKNGRSNGKSRR*
Ga0163180_100052454	F047731	AGGAG	VTYNKDDPVEITLGVCESCDSYVPFVRLVTKDEKRIYQCMTCKAKHTQHVNGKVTFNYLDDSYIFKRN*