Scaffold Ga0163180_10000278

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10000278
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29381
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (70.37%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011340	Metagenome	292	Y
F044552	Metagenome / Metatranscriptome	154	N
F068921	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_1000027812	F068921	N/A	MNKKAICLMDERKDFAIKNLTNKLITKVTFKPQTFYWSKEEYPDVLALHLHDGQVLIPSIDEEGNAPGVLFTNIKWGMYI*
Ga0163180_1000027844	F044552	AGGAG	MAWDKLKEKKPIQTKSIDGYIRTPQDESNLNKSFASVFKGDDGKLILDYIKSITTEAVAGPNIDGNQLFHLEGMRFLAGIIQTRIKKGEQDGR*
Ga0163180_1000027851	F011340	GGAGG	MSADPVTLAVISFGVQAVGTYQGIQAQKAANKAQVQAYEDEKKFNELKAIQDSNNVREEAIKKQKINRAIVAGSGYNDDSRSFLSVQSEIDRIAQKDIGNIRINMMRGNQKMDSMIYTTKVMGKAKEFGGYASIAAAGFKTASYAKSYSAGTTGQYGLDSDITKTAKIRTATEGSN*