Scaffold Ga0163108_10237176

Overview

Basic Information

• Taxon OID: 3300012950
• Scaffold ID: Ga0163108_10237176
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1171
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 155

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029400	Metagenome	188	Y
F062171	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163108_102371763	F029400	GAGG	VKIGDLVTFCPEAWGTPLEDRPLGVITNVSDDPRWASMVTAIFPGDDIPYSSKIEDFEVVNEDW*
Ga0163108_102371766	F062171	GGAG	MKIGDLVSYGTMPHWKLEGCLGILVRKLQWNDQWVEGINWDGDPAWWIQYVGDEAPTWNYEEELTLVTEGN*