Scaffold Ga0137410

Basic Information
Taxon OID	3300012944 Open in IMG/M
Scaffold ID	Ga0137410_10001059 Open in IMG/M
Source Dataset Name	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18922
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (77.78%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

18922

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (77.78%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002331	Metagenome / Metatranscriptome	569	Y
F004365	Metagenome / Metatranscriptome	441	Y
F005023	Metagenome / Metatranscriptome	414	Y
F034362	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137410_1000105912	F034362	GGAGG	MASRIAVLAAVASLQVGCYNYAPLRRSELVPATYLAVMLTETGSEELAPYIGPNVLVVRGRFLSASDRGLLLSVAGVENRRGDIVEWKGENVMVPAEFVRSLEERQAAAGKTVLLAGAGLAGFFVAYAAFGPGASGTTPGGVGGGPSPR*
Ga0137410_1000105914	F004365	AGG	MVPTSRVRALRLRAALAALLLVAPACFVFNRGSKAAASPANDVPEGEIALTVTNHNYLDVVVYVLHDGLQTRIGTVTGSSSAVFFLPARLLGQAREIQLYGDAIGNDAYARTDILVVQRGQYIEWTLETDLRRSSVGVF*
Ga0137410_100010595	F002331	GGAG	MKRALLTLGLAAVVATPAAAQWLGEPVWNSPKGGTGVTISGDYARPNSGYGKGNTWGGRASLGIGTITLTAGVARWKPDSATESFTSIGGNAAFRLIGGSLLPFSLNLQVGAARTDSANSTPAQTAVTGAVGFSVPLPTPGISIEPYFSPGVRYRSVSGAGNSTEFGYVFGANLSFGLVGVHLAYDNEKVKGGGSRRVFGVGAHVDLHLPLGM*
Ga0137410_100010596	F005023	GAGG	MKRTALTLGLALLATPAAAQWLGEPMWNHPNAGSGFTIYGDYAQPNNGAGGGNAFGGRVALGAGVFTLTGGVSSWKSDLVSDHITTIGGTAAFRLIGGSLIPVAVNLLLGGGHSMDVKSTTTALPVQTMFVGAVGLSVPLPTPVVSVEPYVSSGIRYHHYSSAGPGVSDHEINFGWVVGGNIGFGPIGIHVAYDSEKFGDGTTHGVFGVGASLGLRP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137410_10001059

Overview

Ecosystem & Geography

Associated Families

Sequences