Scaffold Ga0164241_10050398

Overview

Basic Information

• Taxon OID: 3300012943
• Scaffold ID: Ga0164241_10050398
• Source Dataset Name: Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3056
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.83
  • Long. (^o): -122.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024344	Metagenome / Metatranscriptome	206	Y
F038259	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164241_100503982	F024344	GGAGG	MNPTIAFLRPGAGGEPEVVVNFGPLTGREATLAEIDRLARRLLEVAARVRVHAVRTHDMTPETETIVHQVVAEAEAAASDSGRLRDICEVWAVDCAEERSLEPLGL*
Ga0164241_100503985	F038259	AGG	LRTKVTLVVAVLALVATGAAAADSTPVGPLPKPAVTKVTTAKGSLVAVALPAQPARTGLVWRVAGVLDTRVVKQVGEADVGPSVVLVFRVVGRGRASLHFALTRGDTSPKAVRAVRYDLRVT*