Scaffold Ga0162651_100003465

Overview

Basic Information

• Taxon OID: 3300012938
• Scaffold ID: Ga0162651_100003465
• Source Dataset Name: Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1600
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Ranch near Red Deer, Alberta, Canada
• Coordinates
  • Lat. (^o): 52.172047
  • Long. (^o): -113.738964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009497	Metagenome / Metatranscriptome	317	Y
F012897	Metagenome / Metatranscriptome	276	N
F061987	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0162651_1000034651	F012897	AGGAGG	MTALTKAAFLVALPLGAAWYLWHGHRIVAAALMAAAFAFIIGTKIRSDVRRKQEEEDLQEQAKSDGRYVAAHIEGLSQPQTPTAAELPAKSVAHLEEMWAQITRELKR*
Ga0162651_1000034652	F009497	GGA	MTWLYTVTSNPLALLISALRVIGILGFALLAGFFIIQDAYLETTLSVLTTLAWIAATTEAMDLVLERYS*
Ga0162651_1000034653	F061987	N/A	MPLKLRPTGLGSGTYKDNVDYSVFSGEWLIGRIYERNGFPDAVRFFWSLHGVALTRAPDIHTDGHAPSLEAAKAVFKSNWLRWLEWSERAEVE*