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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012936 Open in IMG/M |
| Scaffold ID | Ga0163109_10023755 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4528 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Costa Rica: the Eastern Pacific | |||||||
| Coordinates | Lat. (o) | 9.5025 | Long. (o) | -92.3286 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000724 | Metagenome / Metatranscriptome | 919 | Y |
| F003326 | Metagenome / Metatranscriptome | 494 | Y |
| F004819 | Metagenome / Metatranscriptome | 422 | Y |
| F013960 | Metagenome / Metatranscriptome | 267 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0163109_100237554 | F003326 | GGA | MATLEEKKKLIRTIKTPNRYFRLNFSRYGGEVAMGTITKDQYEYWTDNDGFEEYMVQVDFDADDANKEIPERAQFDRPFYEYADIVHVAGPEWADSQTLYIEELNKKGEPMEDGQGGYVKDIQHDFGDLESMGALIKTMEEHHTGSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGIEIDKLTIEMVNADGFKVFNEIEYDGQVYYLEEDSTGKSSSFYVAKGDNLK* |
| Ga0163109_100237555 | F013960 | N/A | MNKGVENMYKREDYYYSRIQPILLMKELDENYSGETELVRAIMKECISEMIVRTRHELAVANEELWSLNDWPEGEGFGSSDRSSYIRRIINATDFERKFLQAEQELATINRLTECPKNDTVRAYMIMNDMLQEGLTQGGQ* |
| Ga0163109_100237557 | F004819 | AGAAGG | MQFWPKDEDPRLDERSARFHGRVMKGDLATLPYVFDQGNRDINVARATNYVTWDYDKDMWCEVDHLMLTFYIKARTTDTREYLEDKINRDVVKLIKGPCYYKSAKVYCTIDMEYPEDESIYDIIKVPKGKRPAPYCVEGDEGDITYHVTLHIQEANPMDLIVYDEADRGDYFDLHGNNLEKEVKETA* |
| Ga0163109_100237558 | F000724 | AGGAG | MPKKEKVWTMGSKGPIGPWAWHVWIKGKKKPERIVAFDIQHIKDQLEHRQMIKAKKLPEEKDDFTSMPLGPKGATVNRPADYDTGFKILREWIDQHGGPPEEIRVKLRELYIDYDKAQQKTTIYSARKKGRHKI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |