Scaffold Ga0163109_10008033

Overview

Basic Information

• Taxon OID: 3300012936
• Scaffold ID: Ga0163109_10008033
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7893
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 9.5025
  • Long. (^o): -92.3286
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093944	Metagenome / Metatranscriptome	106	N
F095060	Metagenome / Metatranscriptome	105	N
F100546	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163109_100080333	F095060	AGGAG	MSFSYDHDIFEQMKMDEEKPKYSLQINNFDKSHVLKTTANQCLSNLPQKEERILRMLSGFGLHNQYDCKEIAKQFNISEVEVIQIANQGFYKFTMSYFSYLKELRTH*
Ga0163109_100080334	F100546	N/A	MFKLLLSTILLFIFTKTVNAAALECDVDDYLIQNLSVISINTVNLKIEPLVSLDEIPSFISIKIDNHFSDWAQSSQLTGSPLKMNISPDIYFYLKPSGNGYMDGFYIIRNGDYVTKLDSYCSFNILSNYQSDFIHFDKEEPLDEL*
Ga0163109_100080336	F093944	AGGAGG	VDETKVTSAILKHIENNFETTEQDGWRVEYDGNFSTPEQDQENGESRFVVTKIDGGSLFYVIWDYTSKSILEYSEG*