Basic Information | |
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Taxon OID | 3300012936 Open in IMG/M |
Scaffold ID | Ga0163109_10000149 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 55980 |
Total Scaffold Genes | 93 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 70 (75.27%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
Source Dataset Sampling Location | ||||||||
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Location Name | Costa Rica: the Eastern Pacific | |||||||
Coordinates | Lat. (o) | 9.5025 | Long. (o) | -92.3286 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F030101 | Metagenome / Metatranscriptome | 186 | Y |
F050275 | Metagenome / Metatranscriptome | 145 | N |
F058189 | Metagenome / Metatranscriptome | 135 | N |
F082265 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0163109_1000014961 | F030101 | AGGAG | MTDYPTQELLLLSFSAYRVNKGYEKTTRRHSESPPTFSNKELIAYTISSRYEQSPFIPEDFTPLKVTEADKKAKESADKHMRRYTMLAMGDLPDFESDLFSAYSSERMPIGRIGLLAYLPAFVDREIEAKMYKQRLKNEFEQSNYILHNITEATDVEILKVIPLNNAIYDAPAFLHFGCIGKDLVCFSKKEKFAVGKTYEIVGKIKGQDKERDSGLPMTRLNYVKVRNAEAV* |
Ga0163109_1000014968 | F058189 | GGAG | MKYSLGIDFKLPDMYSMYWHEFGRKLQYEELYFADKRILPVVTGFLITAKDIDWPVWNLMSALDLELHTARLFVTNPHRKLLIHRDCVAGSDKLREWAINVPIAHCDMGTNEWFADDDNDFGDEQFAPGGSAITPQWFDKDYVISESSLLNGIRLIRTDVMHRSNNMGNDNRRAVLSLRGDPNITYEEVAERINDHNRRCAEDYSRP* |
Ga0163109_1000014981 | F082265 | N/A | MYSVEFDHDEVCITVMDDTGVHGDLKIRSYEDIVYITQDDEELDVEFILEINPKMWEDLIAAIHSPEGFFMRKRR* |
Ga0163109_1000014982 | F050275 | GAGG | LTNNEDILVFDYDFDKSLLLDFWNQNQDKTQPYTDKRFGKFVMNNWRILNDIEIEYSNILCKQFDIDAIPKFYILEANTQLLPHVDQDTTCSINFLLSDGAAPVRFTDNEYYYKSALLNTTRKHSVDKYPKDRILFKLSVKDEGFDTVKQKILNTLSRR* |
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