Scaffold Ga0163109

Basic Information
Taxon OID	3300012936 Open in IMG/M
Scaffold ID	Ga0163109_10000149 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012936 Open in IMG/M

Scaffold ID

Ga0163109_10000149 Open in IMG/M

Source Dataset Name

Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	55980
Total Scaffold Genes	93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	70 (75.27%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

55980

Total Scaffold Genes

93 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

70 (75.27%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location Name	Costa Rica: the Eastern Pacific
Coordinates	Lat. (^o)	9.5025	Long. (^o)	-92.3286	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Costa Rica: the Eastern Pacific

Coordinates

Lat. (^o)

9.5025

Long. (^o)

-92.3286

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030101	Metagenome / Metatranscriptome	186	Y
F050275	Metagenome / Metatranscriptome	145	N
F058189	Metagenome / Metatranscriptome	135	N
F082265	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163109_1000014961	F030101	AGGAG	MTDYPTQELLLLSFSAYRVNKGYEKTTRRHSESPPTFSNKELIAYTISSRYEQSPFIPEDFTPLKVTEADKKAKESADKHMRRYTMLAMGDLPDFESDLFSAYSSERMPIGRIGLLAYLPAFVDREIEAKMYKQRLKNEFEQSNYILHNITEATDVEILKVIPLNNAIYDAPAFLHFGCIGKDLVCFSKKEKFAVGKTYEIVGKIKGQDKERDSGLPMTRLNYVKVRNAEAV*
Ga0163109_1000014968	F058189	GGAG	MKYSLGIDFKLPDMYSMYWHEFGRKLQYEELYFADKRILPVVTGFLITAKDIDWPVWNLMSALDLELHTARLFVTNPHRKLLIHRDCVAGSDKLREWAINVPIAHCDMGTNEWFADDDNDFGDEQFAPGGSAITPQWFDKDYVISESSLLNGIRLIRTDVMHRSNNMGNDNRRAVLSLRGDPNITYEEVAERINDHNRRCAEDYSRP*
Ga0163109_1000014981	F082265	N/A	MYSVEFDHDEVCITVMDDTGVHGDLKIRSYEDIVYITQDDEELDVEFILEINPKMWEDLIAAIHSPEGFFMRKRR*
Ga0163109_1000014982	F050275	GAGG	LTNNEDILVFDYDFDKSLLLDFWNQNQDKTQPYTDKRFGKFVMNNWRILNDIEIEYSNILCKQFDIDAIPKFYILEANTQLLPHVDQDTTCSINFLLSDGAAPVRFTDNEYYYKSALLNTTRKHSVDKYPKDRILFKLSVKDEGFDTVKQKILNTLSRR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0163109_10000149

Overview

Ecosystem & Geography

Associated Families

Sequences