Scaffold Ga0163110_10589608

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10589608
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 857
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Libanvirus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004869	Metagenome / Metatranscriptome	420	Y
F005533	Metagenome / Metatranscriptome	397	Y
F029129	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_105896082	F004869	GGAG	MSYDTEHYYALHTFLEDDELHEIWNIVEKAMNRYGYDVSNSELSMRLYDSELEENIEHDMENLLDSLSEGKDYGSKVDALVDSMGVTENKVAQGHVRKDLDAL*
Ga0163110_105896083	F029129	GGAG	MTTRTEPLAPHRTFIIEVKEDGTSKVNTYGDKLHSLIDDLGWEYQRMGRSGRETYDEICHLLGMIPEDEVYMEI*
Ga0163110_105896084	F005533	GGGGG	MSYTKNEVALETLISNINNQFYYIGEEDDKVAPIDVKKFTEHCVTFIDSLEIEK*